PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125940.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 161aa    MW: 17956.4 Da    PI: 8.0823
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY215.22.1e-6621552170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+    q+l+ ++              ++++ +++   + + s+s+ +
  XP_028125940.1   2 SLDIASESVCYVHCNFCNTILAVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QKQQFSFEDASKDSGSSSKCN 83 
                     567899********************************************99999998873.............333333433333333333333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +     e+ ++e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125940.1  84 KF-GAFESAEHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155
                     33.335677889999999.8****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MSLDIASESV CYVHCNFCNT ILAVSVPCSS MLTIVTVRCG HCANLLSVNM GALLQTLPHQ  60
DLQKQQFSFE DASKDSGSSS KCNKFGAFES AEHEPPRMPP VRPPEKRQRV PSAYNRFIKE  120
EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-64YABBY family protein