PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125941.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

YABBY

Protein Properties

Length: 148aa MW: 16702.2 Da PI: 10.0457

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	189.3	1.9e-58	4	142	20	170
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 i+ vsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ ++l++++ +++ + + s+s+ ++ e+ ++e pr+pp XP_028125941.1 4 RIIHVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL----------QKLQKQQFSFEDASKDSGSSSKCNKFG-AFESAEHEPPRMPP 87 6999*******************************999983..........455555555555555555544444443.35778899999999 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_028125941.1 88 -VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 142 .8**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence
MIKRIIHVSV PCSSMLTIVT VRCGHCANLL SVNMGALLQT LPHQDLQKLQ KQQFSFEDAS 60 KDSGSSSKCN KFGAFESAEH EPPRMPPVRP PEKRQRVPSA YNRFIKEEIQ RIKASNPDIS 120 HREAFSTAAK NWAHFPHIHF GLKLDGNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-50	YABBY family protein