PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125942.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

YABBY

Protein Properties

Length: 147aa MW: 16574 Da PI: 9.7978

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	184.2	7e-57	4	141	20	170
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss.eklsenedeevprvp 113 i+ vsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ + ++++++ + +++s s+s+ + + e+ ++e pr+p XP_028125942.1 4 RIIHVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QLQKQQFSFEDASKDSGSSSKCNkFGAFESAEHEPPRMP 85 6999**************************99999998773.............334444444444444433333330233567888999999 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_028125942.1 86 P-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 141 9.9**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
MIKRIIHVSV PCSSMLTIVT VRCGHCANLL SVNMGALLQT LPHQDLQLQK QQFSFEDASK 60 DSGSSSKCNK FGAFESAEHE PPRMPPVRPP EKRQRVPSAY NRFIKEEIQR IKASNPDISH 120 REAFSTAAKN WAHFPHIHFG LKLDGNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-52	YABBY family protein