PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125943.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

YABBY

Protein Properties

Length: 145aa MW: 16332.7 Da PI: 9.7978

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.3	2.3e-55	4	139	20	170
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 i+ vsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ ++++ +++ + + s+s+ ++ e+ ++e pr+pp XP_028125943.1 4 RIIHVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QKQQFSFEDASKDSGSSSKCNKF-GAFESAEHEPPRMPP 84 6999**************************99999998873.............33333343333333333333333.335677889999999 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_028125943.1 85 -VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 139 .8**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MIKRIIHVSV PCSSMLTIVT VRCGHCANLL SVNMGALLQT LPHQDLQKQQ FSFEDASKDS 60 GSSSKCNKFG AFESAEHEPP RMPPVRPPEK RQRVPSAYNR FIKEEIQRIK ASNPDISHRE 120 AFSTAAKNWA HFPHIHFGLK LDGNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	3e-51	YABBY family protein