PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125944.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 142aa    MW: 15941.2 Da    PI: 9.4156
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY187.19e-58113623170
           YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117
                     +vsvP +s++++vtvrCGhC++llsvn+    q+l+ ++           ++l++++ +++   + + s+s+ ++     e+ ++e pr+pp +r
  XP_028125944.1   1 MVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL----------QKLQKQQFSFEDASKDSGSSSKCNKFG-AFESAEHEPPRMPP-VR 83 
                     59********************************999983..........455555555555555555544444443.35778899999999.8* PP

           YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125944.1  84 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 136
                     ***************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MVSVPCSSML TIVTVRCGHC ANLLSVNMGA LLQTLPHQDL QKLQKQQFSF EDASKDSGSS  60
SKCNKFGAFE SAEHEPPRMP PVRPPEKRQR VPSAYNRFIK EEIQRIKASN PDISHREAFS  120
TAAKNWAHFP HIHFGLKLDG NQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-50YABBY family protein