PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125945.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 141aa    MW: 15813 Da    PI: 9.0193
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY181.45.1e-56113523170
           YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss.eklsenedeevprvppvi 116
                     +vsvP +s++++vtvrCGhC++llsvn+    q+l+ ++              + ++++++  + +++s s+s+ + +   e+ ++e pr+pp +
  XP_028125945.1   1 MVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QLQKQQFSFEDASKDSGSSSKCNkFGAFESAEHEPPRMPP-V 81 
                     59***************************99999998773.............3344444444444444333333302335678889999999.9 PP

           YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125945.1  82 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 135
                     ****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MVSVPCSSML TIVTVRCGHC ANLLSVNMGA LLQTLPHQDL QLQKQQFSFE DASKDSGSSS  60
KCNKFGAFES AEHEPPRMPP VRPPEKRQRV PSAYNRFIKE EIQRIKASNP DISHREAFST  120
AAKNWAHFPH IHFGLKLDGN Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-52YABBY family protein