PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125946.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 139aa    MW: 15571.7 Da    PI: 9.0193
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY176.51.7e-54113323170
           YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117
                     +vsvP +s++++vtvrCGhC++llsvn+    q+l+ ++              ++++ +++   + + s+s+ ++     e+ ++e pr+pp +r
  XP_028125946.1   1 MVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QKQQFSFEDASKDSGSSSKCNKF-GAFESAEHEPPRMPP-VR 80 
                     59***************************99999998873.............33333343333333333333333.335677889999999.8* PP

           YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125946.1  81 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 133
                     ***************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MVSVPCSSML TIVTVRCGHC ANLLSVNMGA LLQTLPHQDL QKQQFSFEDA SKDSGSSSKC  60
NKFGAFESAE HEPPRMPPVR PPEKRQRVPS AYNRFIKEEI QRIKASNPDI SHREAFSTAA  120
KNWAHFPHIH FGLKLDGNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.18e-51YABBY family protein