PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126286.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 430aa MW: 47454.1 Da PI: 7.4622

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	358	403	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el P+ +k + a++L +AveYIk+Lq XP_028126286.1 358 SIAERVRRTKISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 403 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MYGVGDSGAI SKDSSMLFSS NFKQSDGESM MKSRDSMNSD LYQQPQQQNR SSGLMRYSSA 60 PSSFFHHHHH HQSLSSSPPE SEVMFASFMS SSNGSGGDSD SHDLQIQTTA MKHEPPEQNK 120 QYSSSTSTQM IYQTALDHHD LANNHSNSMS NNYSNNLENP MMQGKTTTSG NCSNLIRQSS 180 SPAGFFSNLT AAAGNGFGIV RDVGNGTDGK ESATTRLNDH INFSSGPASC SRFMPQITEN 240 GNKSIEATSQ MNGHLGSSNG SNRFFVSSFE NECWNDSGFT GLKRSRDGDE VKFSGFNALE 300 SHQNGEYRNY TATGLTHHLS LPKTSAETAA IDKFFQFQQD SVPCKIRAKR GCATHPRSIA 360 ERVRRTKISE RMRKLQELFP NMDKQTNTAD MLDLAVEYIK DLQEQLKILT DKQAKCTCSS 420 KQKQFSNPAS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MYGVGDSGAI SKDSSMLFSS NFKQSDGESM MKSRDSMNSD LYQQPQQQNR SSGLMRYSSA  60
PSSFFHHHHH HQSLSSSPPE SEVMFASFMS SSNGSGGDSD SHDLQIQTTA MKHEPPEQNK  120
QYSSSTSTQM IYQTALDHHD LANNHSNSMS NNYSNNLENP MMQGKTTTSG NCSNLIRQSS  180
SPAGFFSNLT AAAGNGFGIV RDVGNGTDGK ESATTRLNDH INFSSGPASC SRFMPQITEN  240
GNKSIEATSQ MNGHLGSSNG SNRFFVSSFE NECWNDSGFT GLKRSRDGDE VKFSGFNALE  300
SHQNGEYRNY TATGLTHHLS LPKTSAETAA IDKFFQFQQD SVPCKIRAKR GCATHPRSIA  360
ERVRRTKISE RMRKLQELFP NMDKQTNTAD MLDLAVEYIK DLQEQLKILT DKQAKCTCSS  420
KQKQFSNPAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-64	bHLH family protein