PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028126567.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24724.4 Da    PI: 10.0195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028126567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.27e-211663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k + q tfskRr g++K A+EL++LC++e+a+i+fs+ gk+y +
  XP_028126567.1 16 KIEIKNRLQATFSKRRSGLFKAASELCTLCGVEIAIIVFSPAGKVYSF 63
                    58889999**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MAKKPSMGRQ KIKIAKIEIK NRLQATFSKR RSGLFKAASE LCTLCGVEIA IIVFSPAGKV  60
YSFGHPNVDS IIDQFLIRNP PPNTTTRHLI EAHCNASVRE LNLQLTQVLN ELEVMKRQGE  120
TFDHMRKASQ RQYWWEAPID KLGLHELEQL RSSMVELKKN VTNQANKIQV ESTTNPLPFF  180
LVNGSGIVDP FESKTSHINA SSSVTPNVHN FGYYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-51M-type_MADS family protein