PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126588.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 539aa MW: 58060.7 Da PI: 5.6791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	354	402	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq XP_028126588.1 354 NSHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 402 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MDMGGTDHFQ QEKRNEDLRN YHSTNLSSDW PIGGSNLTNS SMGSIPTTNP MAVCKGDVME 60 SPSCSSGPSF CPTTVWDHPT NTQNLGFSDI NLQSSAGASN TLGFRKGPLS IERTLDMGWA 120 PQNSTVKGGM FLPTGPGMIP QSLSQFPSDS GFIERAARFS CFGGGNFGDM MNPFSIPESM 180 NPYARGASSV MQRMQEVFVG NGLKSVSSGQ SQKNEVNMVE ASKDVSMSVE LGATEGSPLK 240 NERKSESILR SHDEAKLGVG VSGNDSDEAE FSGGGGGEEE PSSSKAVGLK KRKRSSQDNE 300 TTKDNTEIQR KGDQTPTSTT NKPSGKHVKQ GSQASDSPKE EYIHVRARRG QATNSHSLAE 360 RVRREKISER MKLLQDIVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD 420 FNVEGLLAKD ILQSQAGPSC TLGYSPDMTM PFPSLLPSQP GLTQTGLPGM SNSLDALQRS 480 LNSQLAAMSG GYKEPTQVPN MWGEDELHNV VHMGFNSSAP LDSQDLTGST PPEHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MDMGGTDHFQ QEKRNEDLRN YHSTNLSSDW PIGGSNLTNS SMGSIPTTNP MAVCKGDVME  60
SPSCSSGPSF CPTTVWDHPT NTQNLGFSDI NLQSSAGASN TLGFRKGPLS IERTLDMGWA  120
PQNSTVKGGM FLPTGPGMIP QSLSQFPSDS GFIERAARFS CFGGGNFGDM MNPFSIPESM  180
NPYARGASSV MQRMQEVFVG NGLKSVSSGQ SQKNEVNMVE ASKDVSMSVE LGATEGSPLK  240
NERKSESILR SHDEAKLGVG VSGNDSDEAE FSGGGGGEEE PSSSKAVGLK KRKRSSQDNE  300
TTKDNTEIQR KGDQTPTSTT NKPSGKHVKQ GSQASDSPKE EYIHVRARRG QATNSHSLAE  360
RVRREKISER MKLLQDIVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD  420
FNVEGLLAKD ILQSQAGPSC TLGYSPDMTM PFPSLLPSQP GLTQTGLPGM SNSLDALQRS  480
LNSQLAAMSG GYKEPTQVPN MWGEDELHNV VHMGFNSSAP LDSQDLTGST PPEHMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	295	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-115	bHLH family protein