PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126894.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27166.1 Da PI: 9.9964

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.6	7.9e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+y+s XP_028126894.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYAS 59 8***********************************************86 PP
2	K-box	79.8	6.8e-27	82	170	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e++ L+++++ Lq+++R+l+Ge+L+ L +k+Lq+Le+qLe slk + +K+++l+++i+el +k +q+en +L+kk+ XP_028126894.1 82 PASEVQFWQREAESLRQQLQYLQESHRQLMGEELSGLGVKDLQNLENQLEMSLKGVHVRKDQILTDEIKELNRKGGLIQQENIELNKKV 170 56889**********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDYAST 60 SMKSVIERYN KLKEEQRQLL NPASEVQFWQ REAESLRQQL QYLQESHRQL MGEELSGLGV 120 KDLQNLENQL EMSLKGVHVR KDQILTDEIK ELNRKGGLIQ QENIELNKKV NILHHENTEL 180 HKKVYGAECV NEANRSSHVS RGLLGFNFHA PISLQLSPPQ SQKNEAPAKA MKLGLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-100	MIKC_MADS family protein