PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126901.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27296.8 Da PI: 7.9933

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.7e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev vi++sst ++ye++s XP_028126901.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGVIVISSTKRFYEFAS 59 8***********************************************86 PP
2	K-box	88.1	1.7e-29	81	170	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++a+ +q+e++ L+++++ Lq+++R+l+Ge+L+ Ls+k+L++Le+qLe+slk iR+kK+++l+++i+e ++ +++en++L k+++ XP_028126901.1 81 PTSEAKFWQREAESLRQQLNYLQESHRQLMGEELSGLSVKDLENLESQLETSLKCIRAKKDQILTDEIKEVNHQGVIVHQENMKLFKEIN 170 467899*******************************************************************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGKTVLRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGVIVISS TKRFYEFASS 60 SMRSIFERYN KGDDEHQLLS PTSEAKFWQR EAESLRQQLN YLQESHRQLM GEELSGLSVK 120 DLENLESQLE TSLKCIRAKK DQILTDEIKE VNHQGVIVHQ ENMKLFKEIN ALRKENAELQ 180 KKVYGAKDKN DINRSSHEPH DPSNGYDLHI PTCLQLCQPQ QKDGETPEKA ADLGLQLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	9e-86	MIKC_MADS family protein