PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028127005.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 802aa    MW: 88872.3 Da    PI: 6.2454
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028127005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.5e-24168269199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   ++ +
  XP_028127005.1 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDGG 259
                     99****************************963.3445679************************************************..4579 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_028127005.1 260 GELRLGIRRA 269
                     999****996 PP
2Auxin_resp115.25.7e-38295374382
      Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+stks+F+v+Y+Pras+++Fvv+++k+ k++++++ +G+Rfkm+f+ +ds+err+sG+v+g+ d+dp+rWpnSkWr+L
  XP_028127005.1 295 NAVSTKSTFHVFYSPRASHADFVVPYQKYIKSITNQIPIGTRFKMKFDVDDSPERRCSGVVTGMCDIDPYRWPNSKWRCL 374
                     799****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    
MEIDLNHAVI EVEKNACGNG DCDKGGGGGW GDGCCLSSST SSSSSNSSSS LASSSIYMEL  60
WHACAGPLST LPKKGNVVVY FPQGHLEQAV SSSPFPPMEV TNFDLQPQIF CRVMDVQLLA  120
NKENDEVYTQ LTLLPLPELE VVNLEVKDHG ELGLDEGGLI PTKTPHMFCK TLTASDTSTH  180
GGFSVPRRAA EDCFPPLDYK QQRPSQELVA RDLHGVEWKF RHIYRGQPRR HLLTTGWSIF  240
VSQKNLVSGD AVLFLRDGGG ELRLGIRRAV RPRNGLPDSV LGNQNYQSVL PLVGNAVSTK  300
STFHVFYSPR ASHADFVVPY QKYIKSITNQ IPIGTRFKMK FDVDDSPERR CSGVVTGMCD  360
IDPYRWPNSK WRCLMVRWDD DIVSDRQERI SPWEIDPSVS LPPLSIQSSP RLKKLRVGLQ  420
ATPPDNPIAG GGGFLDFEES IRSSKVLQGQ ENAGLLSPLY ECDKANRPLD FEMQSFAHQS  480
LASNGMEKVN FSDFLKSQQP SAYTGFAESS RFPKVLQGQE ICSLRSLTGK TDVNLGAWAR  540
PDLGCNFFNM YQRPKPNFYP LGSEGVRNVY FPSNDIYKGG RDPVMLSHMT NFARENVPFN  600
GSSIQSGVSR DEVRKPNLLN EPPHGKIASP PTLEANFKNT KDDISNGSMA GCKLFGFSLT  660
GETAMPNSQS SNKRSCTKVH KQGNLVGRAI DLSRLDGYND LLIELERLFS MEGLLRDPNK  720
GWRILYTDSE NDMMVVGDDP WHEFCNVVSK IHIHTQEEVE KMTFGMISDD TQSCLEEAQA  780
VVDVSKSSSV GQPDSPPTVI RM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein