PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028127200.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 365aa MW: 40460.1 Da PI: 6.274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028127200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	178	224	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_028127200.1 178 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 224 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MMCGKKEEEQ GECSQSIQNN IQSYQQQLLL QHHHQMQQQQ QQQQQQQHNT NDSYIGGMSA 60 GMIYQEEISP IIPWSSLPPG HSLNPVHFSS NSARDHDPFL FPPPPPSPYG GLFVNRRPQG 120 LQFAYDGSSS SDHHLRLISD TIGTVVQPGC SAPFGLQAEI GKMTAQEIMD AKALAASKSH 180 SEAERRRRER INNHLAKLRS LLPSTTKTDK ASLLAEVIQH VKELKRQTSV IAETSPVPTE 240 VDELTVDASS DDDGQFVIKA SLCCEDRSDL LPDLIKTLKA LRLRTLKAEI TTLGGRVRNV 300 LFITGDENSN SGGESGDEQQ QHQYSISSIE EALKAVMEKT NGDESSSGSV KRQRTNMNIL 360 EHRSL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MMCGKKEEEQ GECSQSIQNN IQSYQQQLLL QHHHQMQQQQ QQQQQQQHNT NDSYIGGMSA  60
GMIYQEEISP IIPWSSLPPG HSLNPVHFSS NSARDHDPFL FPPPPPSPYG GLFVNRRPQG  120
LQFAYDGSSS SDHHLRLISD TIGTVVQPGC SAPFGLQAEI GKMTAQEIMD AKALAASKSH  180
SEAERRRRER INNHLAKLRS LLPSTTKTDK ASLLAEVIQH VKELKRQTSV IAETSPVPTE  240
VDELTVDASS DDDGQFVIKA SLCCEDRSDL LPDLIKTLKA LRLRTLKAEI TTLGGRVRNV  300
LFITGDENSN SGGESGDEQQ QHQYSISSIE EALKAVMEKT NGDESSSGSV KRQRTNMNIL  360
EHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-88	bHLH family protein