PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547425.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 305aa    MW: 34113.2 Da    PI: 9.0761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07175219655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      er r+RR+ i ++   L +l+P+      ++l+  ++Le+A++Y+k L+
  XP_028547425.1 175 TERSRQRRQLISERTRILEKLMPWE-----RRLDTGTMLEEACKYVKFLE 219
                     6899********************9.....79***************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MESSYRTRIL VSPSLSTPIT FTDGASLNDA DCGGFVPFPS LLQDQTGTAS AIGFSGSDHL  60
SFHPFMMIEQ VDPASRTLIP AATSFKIDSS TGFFQLPNLL SLEPLQDPFM ERFVSNATRC  120
QSVEHISLIQ SSTPHKRTRM CSQYWRCTPS LVPVPNRQLV DPGKNVRQTP SARSTERSRQ  180
RRQLISERTR ILEKLMPWER RLDTGTMLEE ACKYVKFLEA QVTALETMPA ASRVFPSSNP  240
PGNAFGLERL TRQQLLQVMV SSAKVQDMLY KKGFCVVSAE QVAMLRQAME RRLQPLLLLG  300
HLGGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.17e-24bHLH family protein