PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547509.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25143.9 Da    PI: 8.728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121253445
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    en + r  t+  R++g+ KKA ELS LC+++v+v  fss+ +
  XP_028547509.1 12 ENCRARRATYLTRLKGLKKKAGELSLLCGVDVLVASFSSELN 53
                    88999******************************9998743 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MGRAKLSIKY QENCRARRAT YLTRLKGLKK KAGELSLLCG VDVLVASFSS ELNTLEFWPE  60
NNTPEFCRIR ERYLKESAHY EENGKITEQQ ISCQPKPSPS FPLPTFLEEK AAIKIKLLEV  120
RERIDFLQRQ STEVLERLQP QQAIFMPSQQ QPQYLHLHQR LSPFFHCISP QLSVDFSIPL  180
QQDLLHLQQP TPFAQSLPPR EQPKQVSPSL TPEQLFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.13e-11M-type_MADS family protein