PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547581.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 588aa MW: 66774.2 Da PI: 6.7345

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.8	8.8e-27	349	400	4	56
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++WtpeLH+rFv+a+eqL G+++A+P++ilelmkv+gLt+++v+SHLQk+R++ XP_028547581.1 349 VDWTPELHRRFVKAIEQL-GIDQAIPSKILELMKVEGLTRHNVASHLQKFRMH 400 78**************.******************************96 PP
2	Myb_DNA-binding	40.9	4.6e-13	350	398	3	48
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+a++qlG + +++I + m +g+t+ ++ s++qk++ XP_028547581.1 350 DWTPELHRRFVKAIEQLGIDqaIPSKILELMKvEGLTRHNVASHLQKFR 398 6**********************************************97 PP
3	Response_reg	22.8	4.6e-09	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l++d ++ + + le +y v + + e+a+e + k++++++ ++ ++G++ +k ++ + ++p iv++ +++ +++ +G XP_028547581.1 20 ILLCDQDRESAADTKMKLEAMDY-TVYSYCKEEDAMEAVlrKAENYHIAIVE--VAAINGHASFKFLEMVK-DIPTIVISEVHCLNTVMKCIALG 110 788888999999999999999*.8888888888888884555558888876..6789999999998888.9*****9999******* PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++e+l++ XP_028547581.1 111 AAEFLQKPLSEEKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MPCSADDLAL WKDFPKGLGI LLCDQDRESA ADTKMKLEAM DYTVYSYCKE EDAMEAVLRK 60 AENYHIAIVE VAAINGHASF KFLEMVKDIP TIVISEVHCL NTVMKCIALG AAEFLQKPLS 120 EEKLRNIWQH VVHKAFNAGG NAISTSLKPI KDAVATVLQI QSNSNELKIE IPSQLFDMEQ 180 EHEVIYVKEK ENDKFSAPST PQQIKGERLN EAETFLDQPD CSEKDCAIED KELSETPKCI 240 LSETKFVDNA CNNITVVGNS DEIVPCKQGT ATAEEELNSA EGSKADECNS AKEISLQFLF 300 TENVENDDSD SEKQTKKKSF VQSNSCLNRI RGSRRKMKVR SLRTRPKSVD WTPELHRRFV 360 KAIEQLGIDQ AIPSKILELM KVEGLTRHNV ASHLQKFRMH KRHILPKEDD RRWQVHTDPT 420 QRGYMQKPIM AFPPYHSNYI IPPSQPYPIW PHQAYHVPNV QMWRHSGLPT WHPPPENWQT 480 KIYPEIHADA WGCPVLPHYS YGYGQFYMPP QGPAISNSGQ DASGDRILKS SYDHCPAEEV 540 IDKVVKEAMK KPWLPLPLGL KPPSTEKILA ELHNKGIHTI PPLPRRRS

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MPCSADDLAL WKDFPKGLGI LLCDQDRESA ADTKMKLEAM DYTVYSYCKE EDAMEAVLRK  60
AENYHIAIVE VAAINGHASF KFLEMVKDIP TIVISEVHCL NTVMKCIALG AAEFLQKPLS  120
EEKLRNIWQH VVHKAFNAGG NAISTSLKPI KDAVATVLQI QSNSNELKIE IPSQLFDMEQ  180
EHEVIYVKEK ENDKFSAPST PQQIKGERLN EAETFLDQPD CSEKDCAIED KELSETPKCI  240
LSETKFVDNA CNNITVVGNS DEIVPCKQGT ATAEEELNSA EGSKADECNS AKEISLQFLF  300
TENVENDDSD SEKQTKKKSF VQSNSCLNRI RGSRRKMKVR SLRTRPKSVD WTPELHRRFV  360
KAIEQLGIDQ AIPSKILELM KVEGLTRHNV ASHLQKFRMH KRHILPKEDD RRWQVHTDPT  420
QRGYMQKPIM AFPPYHSNYI IPPSQPYPIW PHQAYHVPNV QMWRHSGLPT WHPPPENWQT  480
KIYPEIHADA WGCPVLPHYS YGYGQFYMPP QGPAISNSGQ DASGDRILKS SYDHCPAEEV  540
IDKVVKEAMK KPWLPLPLGL KPPSTEKILA ELHNKGIHTI PPLPRRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-116	ARR-B family protein