PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547720.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12648.8 Da    PI: 9.7231
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  XP_028547720.1  9 KKIENNINRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSSFS 58
                    78********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MGRVKLEIKK IENNINRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSSFSGR  60
RRIEDVIEKC INMREHDKGG AKLDKMDKDE LQRELNACQE QPQMLEKPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-25MIKC_MADS family protein