PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547826.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 255aa    MW: 29635.3 Da    PI: 10.0569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-1629122197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ff  l p +++ + +l+lp++f ++ +++k++++   l +++ +sW+v+l  +k +++  ++ ++GWk+ ++a++Lk g f++F ++g + f  +
  XP_028547826.1  29 FFRLLFPDSNFMK-QLRLPRSFGDHVQIEKPNKQIAELINRKAKSWKVNL--NKDPEGffCFTGEGWKKLARAHHLKLGYFLTFDYNGGMLF--N 118
                     6667766666666.5********88899999999****************..999999867788**********************998888..5 PP

                     EEEE CS
              B3  94 vkvf 97 
                     +++f
  XP_028547826.1 119 FRIF 122
                     6555 PP
2B358.89.7e-19152248396
                     EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      + ++s++l++  + +pkk+  +      +    ++ +++l de+gr+W v+l++   r++ +r+++ +GW eFv+ ngL+ gD +vF+l+   +
  XP_028547826.1 152 EAVIHSSNLSKPYMNIPKKCK-KLtelskD---GGKGKVVLIDEKGRKWPVRLSHkaeRGSTERFFIYSGWLEFVHGNGLRRGDRCVFELVC-LR 241
                     56789999***9*******74.55565431...34458***************99887788888*************************985.45 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     fe ++kv
  XP_028547826.1 242 FESFIKV 248
                     5555554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MSRLKVEKET LSPKIETIDS SSGFVGYSFF RLLFPDSNFM KQLRLPRSFG DHVQIEKPNK  60
QIAELINRKA KSWKVNLNKD PEGFFCFTGE GWKKLARAHH LKLGYFLTFD YNGGMLFNFR  120
IFGLNTTEIQ NYPSQEEKKC NEEDEEKANI FEAVIHSSNL SKPYMNIPKK CKKLTELSKD  180
GGKGKVVLID EKGRKWPVRL SHKAERGSTE RFFIYSGWLE FVHGNGLRRG DRCVFELVCL  240
RFESFIKVRI IRCGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-18B3 family protein