PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547963.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 117aa    MW: 12591.5 Da    PI: 10.4794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-056284123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ Cgk F +   L  H  +H
  XP_028547963.1 62 YKCSVCGKAFASYQALGGHKASH 84
                    9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MTINDSSSRP QPTLEGWPKR KRSKRPTKEH YIALCLVKLA HSSSDHRLPL LPFSPSADGL  60
SYKCSVCGKA FASYQALGGH KASHSKKPAG GVADDAASSS SGKIQHIIAI FIKLLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11825PKRKRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-21C2H2 family protein