PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548041.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25812.1 Da    PI: 9.2275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  XP_028548041.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 59
                    79***********************************************95 PP
2K-box1141.4e-37761724100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ss++ +e + ++++qqe+akL+ +i+ L +++Rhl+Ge+L+sLs+keL+qLe++Le+++++iRskK+e+l+++ie +qk+e++lq+en++Lr+k+
  XP_028548041.1  76 SSNSVVEVNSQQYYQQEAAKLRHQIQILHNTNRHLMGEGLTSLSIKELKQLESRLERGITRIRSKKHEMLFAEIEFMQKREEDLQNENMYLRAKI 170
                     44445899999***********************************************************************************9 PP

           K-box  99 ee 100
                      e
  XP_028548041.1 171 TE 172
                     76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRLYEYSNS  60
STNSTIERYK KACANSSNSV VEVNSQQYYQ QEAAKLRHQI QILHNTNRHL MGEGLTSLSI  120
KELKQLESRL ERGITRIRSK KHEMLFAEIE FMQKREEDLQ NENMYLRAKI TENERQANIA  180
TTASALDTLS TFDSRNYYSV NMLEAAANYH NQDQTALHLG YDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.13e-95MIKC_MADS family protein