PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548088.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 186aa    MW: 20842.1 Da    PI: 9.6478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1674165197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f ++ ++s v +  +l++pk+f ++  +    + ++ l   +g++W vk+   + s    +++GWk+F+ +n+Lk gD +vF+l+++ +e +l v
  XP_028548088.1  74 FTSIVVKSQVESPYQLMIPKSFHKSLPNA---TLQVPLV-HQGKTWVVKY--YGESALKRFGTGWKKFALENKLKIGDGCVFELIDDdKELKLGV 162
                     6788999***************9877544...2245555.59********..777777889************************8878888888 PP

                     EEE CS
              B3  95 kvf 97 
                     +++
  XP_028548088.1 163 QIL 165
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MTATTKEDVT VCKILDDEAG GVKGNRTVVV RYTRWSSKVT ATRDYYIQCS DRLKRYAGLP  60
VPISTTPLTG NPYFTSIVVK SQVESPYQLM IPKSFHKSLP NATLQVPLVH QGKTWVVKYY  120
GESALKRFGT GWKKFALENK LKIGDGCVFE LIDDDKELKL GVQILNGQIP LEFIRLGSAE  180
KPINLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-07B3 family protein