PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548188.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 836aa MW: 94449.4 Da PI: 7.3313

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	49.2	1e-15	18	60	75	117
CG-1 75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +g+ e +++yYa++e++p+f rrcywlL+++le+ivlvhy+++ XP_028548188.1 18 IGNEERIHVYYARGEDDPNFYRRCYWLLDKKLEHIVLVHYRQT 60 7899************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MIRRVFNDRG SSRPFEQIGN EERIHVYYAR GEDDPNFYRR CYWLLDKKLE HIVLVHYRQT 60 LENVPALVEY KEPFYLAGMM SDSSPLTPVN SISGSMQSDS SGSAAMSEEI NSREDQAIFT 120 GSGIFLSKKE TGLHIKELSL HDINNLGWAE LALASEYIEP CMGKADGALD SSDSVQFKAI 180 SSIHDQGGTE YLETPDDQGL PSVLLNTSNL KMMSQIVSDG PKMFDDDIFN NKNGFEQWDS 240 LKKDSFGTLE APLISNGNGS NLFRAMDQSS VLQQIFTINE VSPEWGYSTV ETKVVVIGNF 300 AASHKHLESS SIYCVFGELC VGMQMVQSGV YRCIALPQMP GKVDAFLSLD GQTPISQVIT 360 FHYRHVPAVQ LNDGVTSKDA NGEEKFRDVM AQKRLAHLLF STSDSMPLFS SKMLPKAIKE 420 AQRVAQITSP YIENDWKELL KLDCKNEITF YQACEDLLEL VFKNKLQEWL MKKIAEGCKI 480 TTRDSQGQGV IHLCTILDYT WAVSLYSLSG FSLDFRDAYG WTALHWAAHL GREKMVATLI 540 YAGANPSLVT DPTPENPGGL TAADLASKGG HDGLAAYLAE KGLTAHFEAM SLSGNVPSSV 600 LRVSKDQVNL EDLHYEMLSE QEVCLKESLE AYRNAADAAD RIQAAFRERT LKLQTESVQL 660 ANPQMEASQI VAALRIQHAY RNYNRRRLMK AAARIQSHFR TWRIRKDFLN MRRQVIKIQA 720 AVRGHQVRKQ YRKIVWSVGV LEKAVLRWRL KRKGLRGMQV KAMEVGRANN LEESTSTEED 780 FFKISRKHAE ERVQRSVVRV QSMFRSYQAQ QQYRRLKLAQ EQAKLEFSLN GDSKFL

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MIRRVFNDRG SSRPFEQIGN EERIHVYYAR GEDDPNFYRR CYWLLDKKLE HIVLVHYRQT  60
LENVPALVEY KEPFYLAGMM SDSSPLTPVN SISGSMQSDS SGSAAMSEEI NSREDQAIFT  120
GSGIFLSKKE TGLHIKELSL HDINNLGWAE LALASEYIEP CMGKADGALD SSDSVQFKAI  180
SSIHDQGGTE YLETPDDQGL PSVLLNTSNL KMMSQIVSDG PKMFDDDIFN NKNGFEQWDS  240
LKKDSFGTLE APLISNGNGS NLFRAMDQSS VLQQIFTINE VSPEWGYSTV ETKVVVIGNF  300
AASHKHLESS SIYCVFGELC VGMQMVQSGV YRCIALPQMP GKVDAFLSLD GQTPISQVIT  360
FHYRHVPAVQ LNDGVTSKDA NGEEKFRDVM AQKRLAHLLF STSDSMPLFS SKMLPKAIKE  420
AQRVAQITSP YIENDWKELL KLDCKNEITF YQACEDLLEL VFKNKLQEWL MKKIAEGCKI  480
TTRDSQGQGV IHLCTILDYT WAVSLYSLSG FSLDFRDAYG WTALHWAAHL GREKMVATLI  540
YAGANPSLVT DPTPENPGGL TAADLASKGG HDGLAAYLAE KGLTAHFEAM SLSGNVPSSV  600
LRVSKDQVNL EDLHYEMLSE QEVCLKESLE AYRNAADAAD RIQAAFRERT LKLQTESVQL  660
ANPQMEASQI VAALRIQHAY RNYNRRRLMK AAARIQSHFR TWRIRKDFLN MRRQVIKIQA  720
AVRGHQVRKQ YRKIVWSVGV LEKAVLRWRL KRKGLRGMQV KAMEVGRANN LEESTSTEED  780
FFKISRKHAE ERVQRSVVRV QSMFRSYQAQ QQYRRLKLAQ EQAKLEFSLN GDSKFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein