PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548294.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family AP2
Protein Properties Length: 329aa    MW: 36673.9 Da    PI: 5.097
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.9e-14143202155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+  k++g+++A+++d  ++  g  ++ k+++lg+++++e+Aa+a++ a +k+ g
  XP_028548294.1 143 SCYHGVTKLKWSGKFEAHLWDnTCKvEGrkRKgKHVYLGSYDSEEKAARAHDLAVLKYCG 202
                     79*******************999996665336***********************9976 PP
2AP251.91.9e-16247300155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++k +g+W A+I  +   g  r  k ++lg+f t+eeAa+a++ a+ +l+g
  XP_028548294.1 247 SVYRGVTRRK-DGKWQARIGRV---GeSRdvKDIYLGTFETEEEAAEAYDIAAIELRG 300
                     78*****999.9*******998...553458*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MIEQRESLDP EEVIDSFMNQ KDRSLFLNDV GDGLVDSEKS REYCNAEYLI GLPRPNDSSA  60
FSMPSGFETS AVASGQPDAD RVEGQSVGHQ EAGAQESFAG QNTSFLEGNS MEIMPVVPAN  120
SGEKKVGTLL AAAMRKYAVP RSSCYHGVTK LKWSGKFEAH LWDNTCKVEG RKRKGKHVYL  180
GSYDSEEKAA RAHDLAVLKY CGPSHTSKLN FPVSEYEKEL EIMESMTQDE YVVHVRRQSS  240
CFSRGASVYR GVTRRKDGKW QARIGRVGES RDVKDIYLGT FETEEEAAEA YDIAAIELRG  300
VHAVTNFDIS NYCEGSFKQI EEPPCKLET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.14e-64AP2 family protein