PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548323.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-X1

Protein Properties

Length: 861aa MW: 94982.4 Da PI: 8.3514

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17	1.3e-05	187	205	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG HkC lCH+G CppCp+ XP_028548323.1 187 CG-HKCLLLCHPGVCPPCPK 205 .*************96 PP
2	zf-NF-X1	18.1	5.9e-06	292	311	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkHkC++ CH GpC+ Cp+ XP_028548323.1 292 CGKHKCSRGCHSGPCGACPL 311 ******************95 PP
3	zf-NF-X1	18.2	5.4e-06	420	445	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC +lCH+G C pCp+ XP_028548323.1 420 CGrklrcnNHKCPSLCHRGSCAPCPL 445 666666669***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MATAAASVLS PSSANPAPSV SDSDTGSSSS GDEAAGISGA SALEDSIFAA YLQICGGHSP 60 SHDLIKIRSF LSAAAGRGGH FVSCLICLER IRPSDPIWSC SSGCHALFHL PCIQNWANQC 120 SYRHSSSSSL HSTPDWHCPK CRDLYARDKI PRSYRCFCGK VEDPPSDPWI LPHSCGEVCG 180 RPLRGNCGHK CLLLCHPGVC PPCPKLITAR CFCGSRKDAR RCAQKHFSCN QSCPTFLPCR 240 LHSCTERCHD GRCPPCQVKA FYKCACGKTE EERVCAESDF RCDRPCDGIL KCGKHKCSRG 300 CHSGPCGACP LQGRRTCPCG KKEYKGASCD EDVPTCGLTC EKMLSCGLHR CPERCHRGIC 360 VETCRIVVFK ACRCGSLRKE VPCYQELTCE RKCLRMRDCG RHACKHRCCD GECPPCQEIC 420 GRKLRCNNHK CPSLCHRGSC APCPLMVTIS CFCGETYFEP HKCHYGACPP CRIICGEELS 480 CGHICKHRCH GPIPPPNPEF TLKPKKKKME KNIGVTPGSA CPSCQEIIWV ACLGQHLGEE 540 RPMVCSKTSQ FSCNSLCGNL LACGNHYCTK SCHAVKYQPS SSDGHGSYKD DLAQKHGPSL 600 LNAGSDHAES CEECLLPCQK VREPACSHPC PLPCHSDCCP PCEVLLKRSC HCGAMVHVFN 660 CANYNRLTVE EQQLTRSCRG PCHRKLPNCP HLCSDICHPG QCPSINLCSK KVTVRCACNS 720 LKKEWLCRDV QNLYRQTDRD PKDVVKSLFG IGLIPCNADC KSKVKVADAE LQIQKVPVPK 780 GIDVVAAAVT KRRKRRERIQ VTKQVSKFQA FRSILQRCLL FTLILIVICA SLCYGYKALF 840 WLSDRMYEIE RRKVKKGLSK F

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MATAAASVLS PSSANPAPSV SDSDTGSSSS GDEAAGISGA SALEDSIFAA YLQICGGHSP  60
SHDLIKIRSF LSAAAGRGGH FVSCLICLER IRPSDPIWSC SSGCHALFHL PCIQNWANQC  120
SYRHSSSSSL HSTPDWHCPK CRDLYARDKI PRSYRCFCGK VEDPPSDPWI LPHSCGEVCG  180
RPLRGNCGHK CLLLCHPGVC PPCPKLITAR CFCGSRKDAR RCAQKHFSCN QSCPTFLPCR  240
LHSCTERCHD GRCPPCQVKA FYKCACGKTE EERVCAESDF RCDRPCDGIL KCGKHKCSRG  300
CHSGPCGACP LQGRRTCPCG KKEYKGASCD EDVPTCGLTC EKMLSCGLHR CPERCHRGIC  360
VETCRIVVFK ACRCGSLRKE VPCYQELTCE RKCLRMRDCG RHACKHRCCD GECPPCQEIC  420
GRKLRCNNHK CPSLCHRGSC APCPLMVTIS CFCGETYFEP HKCHYGACPP CRIICGEELS  480
CGHICKHRCH GPIPPPNPEF TLKPKKKKME KNIGVTPGSA CPSCQEIIWV ACLGQHLGEE  540
RPMVCSKTSQ FSCNSLCGNL LACGNHYCTK SCHAVKYQPS SSDGHGSYKD DLAQKHGPSL  600
LNAGSDHAES CEECLLPCQK VREPACSHPC PLPCHSDCCP PCEVLLKRSC HCGAMVHVFN  660
CANYNRLTVE EQQLTRSCRG PCHRKLPNCP HLCSDICHPG QCPSINLCSK KVTVRCACNS  720
LKKEWLCRDV QNLYRQTDRD PKDVVKSLFG IGLIPCNADC KSKVKVADAE LQIQKVPVPK  780
GIDVVAAAVT KRRKRRERIQ VTKQVSKFQA FRSILQRCLL FTLILIVICA SLCYGYKALF  840
WLSDRMYEIE RRKVKKGLSK F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein