PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548428.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 274aa MW: 29997.1 Da PI: 5.2467

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.9	9.5e-56	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql +fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_028548428.1 81 QLLAFWSNQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFL 175 6789**988889***************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprdelk XP_028548428.1 176 VDIVPRDELK 185 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MEQSSQPPPS LMGIVPGAAQ IAYAAPPYAP PMVTGASPVI GAMPSTQSLV GASPFSTAQH 60 QLSYQQVQQF HHHQQQQQQQ QLLAFWSNQM HEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 RDELKEDGLG IPRAALPGMG SPSDTVPYYY VPGPSQVAGA GMIMGKPVDQ TTAAGAAAMY 240 ASASQAHPMA YVWQQPTVQS TQLQPEQDQM PDGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	2e-75	NF-YC family protein