PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548590.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 178aa MW: 20027 Da PI: 10.5098

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.3	1.3e-42	2	143	4	134
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 +kdrhski+T +g+RdRR+ ls+++a++fFdLqd LGfdk+skt++WLl ++k aikel+g s+ a + +++++ +s+ ++s+g XP_028548590.1 2 RKDRHSKIYTTQGPRDRRMKLSLDVARKFFDLQDLLGFDKASKTVQWLLSMSKVAIKELVGAASKCAVVSsSEGEEDNSTVSDSKGkstsailvn 96 8***********************************************************777772223222222222222222456799998 PP TCP 89 .kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++++++k++ ++++ + ++a+esr+karararert ek++++ XP_028548590.1 97 eLESNAKPKGRILKSRSMVQPKVARESREKARARARERTLEKKMMRC 143 7444444455555555555699999***************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MRKDRHSKIY TTQGPRDRRM KLSLDVARKF FDLQDLLGFD KASKTVQWLL SMSKVAIKEL 60 VGAASKCAVV SSSEGEEDNS TVSDSKGKST SAILVNELES NAKPKGRILK SRSMVQPKVA 120 RESREKARAR ARERTLEKKM MRCGREEDGS RGNYQQANVF DWMISSLCCL MTNSKDVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-27	TCP family protein