PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548680.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 278aa MW: 31534.9 Da PI: 8.6518

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.9e-06	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+sF++ +L H++tH XP_028548680.1 4 HICKVCGRSFPTGRSLGGHMKTH 26 68********************9 PP
2	zf-C2H2	15.2	5.9e-05	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ksF++ L H ++H XP_028548680.1 245 YVCTICDKSFPSYQALGGHCSSH 267 9*************999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MENHICKVCG RSFPTGRSLG GHMKTHVVLS SLIDEKDKPV SIYGLRDKPK KSRRFHDVCP 60 EKEKDEVHAE TVNVCSSLNT SIEMARDELK HDDDDELWSG GSYDEHADEM PSQSNKKVSL 120 ISMSVRKRRR TPKISIYSSS PALSSEYANE EMNAALCLLM LSRGTHSIRD ILDEIPPIIE 180 RGKKVHSYLC EDEDRPFKKP KVSCFNKKFD HGDISSHVLD VGKGSSSKQY DCVSGMYKSC 240 KRNKYVCTIC DKSFPSYQAL GGHCSSHRKM KLKELRRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	RKRRR
2	126	131	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-09	C2H2 family protein