PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548684.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 340aa    MW: 37421.9 Da    PI: 9.7713
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind285.23e-8713111300
       GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdaki.....rernlalsekkaavaerd..........................maflq 62 
                     mdd+g+   +n+g yy+p   lk nlglqlms + e  + +     + +n +         +r+                          +++  
  XP_028548684.1   1 MDDEGTPGlQNWGrYYRPP-PLKGNLGLQLMSNVGEPMTMPflsggHGSNYT---------RREcgmpepfspkrcifspkgtpelssmpIDY-S 84 
                     9999998899***888887.9*************987777777666444432.........22233333344555788888899999988899.9 PP

       GAGA_bind  63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepql.edsave.lreeeklealpieeaaeeakekkkkkkrqr 155
                     rd ++++      +++ k+l++ + ++   +++ ++   l++++ +      +  q+ ++   +  ++   +e + +++   +  +k++k    +
  XP_028548684.1  85 RDIWFHN-----NDQNGKILHVFPGNHH--QHSNSYGALLPEATVASAGTSAHTLQMlQPVDPPkEEKAAVIEDPGVSQLDIVPLKKRSKG---Q 169
                     *******.....5677788888776664..3333444555555555555554444440443333123444444455544333333333222...3 PP

       GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                     ++  k++k++  kk  + ++++v++++   r+++  k++d+v+ng++lD s++P+P+C+CtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkr
  XP_028548684.1 170 GRPFKHSKQNMGKKAIAPKEESVNSSG---RRRSANKNLDMVINGIDLDLSGIPAPLCTCTGQPQQCYRWGAGGWQSACCTTSMSMYPLPMSTKR 261
                     444455555555554444444555544...899************************************************************** PP

       GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                     +gaRiagrKmSqgafkk+LekLa+eG d+snp+DLk +WAkHGtnkfvti
  XP_028548684.1 262 KGARIAGRKMSQGAFKKVLEKLAGEGQDFSNPIDLKPFWAKHGTNKFVTI 311
                     *************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MDDEGTPGLQ NWGRYYRPPP LKGNLGLQLM SNVGEPMTMP FLSGGHGSNY TRRECGMPEP  60
FSPKRCIFSP KGTPELSSMP IDYSRDIWFH NNDQNGKILH VFPGNHHQHS NSYGALLPEA  120
TVASAGTSAH TLQMLQPVDP PKEEKAAVIE DPGVSQLDIV PLKKRSKGQG RPFKHSKQNM  180
GKKAIAPKEE SVNSSGRRRS ANKNLDMVIN GIDLDLSGIP APLCTCTGQP QQCYRWGAGG  240
WQSACCTTSM SMYPLPMSTK RKGARIAGRK MSQGAFKKVL EKLAGEGQDF SNPIDLKPFW  300
AKHGTNKFVT ISFHAGACSK RCTSELQELF QIKCKVMLLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.12e-72BBR-BPC family protein