PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548691.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26523.6 Da    PI: 8.4775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-231967149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie + nrqv fskRr+g++KKA+EL++LC+aeva+i+fs  gk y +
  XP_028548691.1 19 KRIEKEANRQVCFSKRRQGLFKKANELCTLCGAEVAIIVFSIAGKPYSF 67
                    79******************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MNPIETRKKG KGRIKIEIKR IEKEANRQVC FSKRRQGLFK KANELCTLCG AEVAIIVFSI  60
AGKPYSFGHP SVDHVLQRFT NVPFTSKARS AATTSFDPMN PMNEELAYLR KKLEEERNKS  120
RALKVAQKAL SPVSNSFWWD INLSLMGMEE LKEYEKVLLE LQAIISQLAQ QSCCHAPELV  180
IRQIDGSSMA ELAQQSCCHA PELVMRQIDG SSMAEVGEAN YLLLQQQWQN YELA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-28M-type_MADS family protein