PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548692.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22580.2 Da    PI: 9.4365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231967149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie + nrqv fskRr+g++KKA+EL++LC+aeva+i+fs  gk y +
  XP_028548692.1 19 KRIEKEANRQVCFSKRRQGLFKKANELCTLCGAEVAIIVFSIAGKPYSF 67
                    79******************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MNPTETRKKG KGRNKIEIKR IEKEANRQVC FSKRRQGLFK KANELCTLCG AEVAIIVFSI  60
AGKPYSFGHP SVNHVLQRFI NVPSTSEARS AATTSFEPMN EELVYLCKKL EEERNKGRAL  120
KVAQKALSPV SNSFWWDINL NLMGMEELTE YEKVLLELQA IISQLAQQSR CHAPEALMRQ  180
IDGSYMAEVG KADYLLLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-35M-type_MADS family protein