PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548770.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 258aa    MW: 28583.8 Da    PI: 9.8672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-054970223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C++sFs+   L  H+r H
  XP_028548770.1 49 RCSECSMSFSSTKALFGHLRIH 70
                    7*******************99 PP
2zf-C2H213.50.00021191213123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k+F++   L  H r H
  XP_028548770.1 191 HQCDKCDKVFNSGQALGGHKRAH 213
                     79***********9999999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
METQSLQVSS PVPALAFEKQ KEISLKIMFK PLQEKQQEMN ASSSSTGIRC SECSMSFSST  60
KALFGHLRIH RKSTNVARKA SLLPLRKAKI SEEFIAACIL MGMKRSKLEA DIDDAKRSKL  120
RWVCAKLNKQ RKNVKEVTSN QSIKHYQRKI CKKVAPSLLA LAEHSVGQWN RENSNEEMSA  180
SVVGSAEMEI HQCDKCDKVF NSGQALGGHK RAHYTGPPLC RPGSNARSQA TLAAAAAAAA  240
EVVFHDFDLN EPVEEVFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-11C2H2 family protein