PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548860.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 153aa    MW: 17453.2 Da    PI: 9.5468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.5e-20958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kri+n  nr+ tf kR+  +l KA+EL +L+dae+ +iifss+gklyey 
  XP_028548860.1  9 KRIDNADNRHFTFFKRKGELLTKANELTILTDAEIGLIIFSSSGKLYEYH 58
                    79***********************************************7 PP
2K-box20.42.1e-0872118247
           K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLs 47 
                     +k+++ +  + +++++l+ e+ k+++ei++Lq  ++++ Ge+++ L 
  XP_028548860.1  72 GKTTNINlEDLNHQQQLHSEMVKIRQEIDELQMRIKQFTGENMTGLR 118
                     5566666455677899***************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MRKGKTEIKR IDNADNRHFT FFKRKGELLT KANELTILTD AEIGLIIFSS SGKLYEYHSP  60
SASMEEIINK YGKTTNINLE DLNHQQQLHS EMVKIRQEID ELQMRIKQFT GENMTGLRCI  120
RLSCKRPSLI CKGVAFAMIM NSSSGMHASA IIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-27MIKC_MADS family protein