PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548914.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 144aa    MW: 16808.2 Da    PI: 6.7038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.3e-221258147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k ien+s r v fskRr+g++KKAeELSvL +a+vav+ fs+ gk+y
  XP_028548914.1 12 KLIENSSSRMVCFSKRRKGLFKKAEELSVLSGARVAVLAFSQAGKMY 58
                    569*******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MIGKGRKKVE NKLIENSSSR MVCFSKRRKG LFKKAEELSV LSGARVAVLA FSQAGKMYCS  60
DAQTLNSLLD PQFNISSEKE AENYWELDYL EALTGNVRAF WYNKPDVQKM DYEELQKFER  120
AILEYEQMQL AKNYGNLFEY EQMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-18MIKC_MADS family protein