PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548952.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YB
Protein Properties Length: 211aa    MW: 23219.1 Da    PI: 7.5746
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.94.5e-5657153197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflP+an+srimkk+lPan+ki+kdaket+qecvsefisf+tseas+kcqrekrktingddll a+atlGfe+y+eplk+yl+kyre+eg
  XP_028548952.1  57 VREQDRFLPVANISRIMKKALPANGKIAKDAKETTQECVSEFISFITSEASEKCQREKRKTINGDDLLSAMATLGFEEYIEPLKLYLQKYREMEG 151
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_028548952.1 152 DS 153
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MLARVSEAAI WDVEVVVSDF FSFAGRRSRG GGSRFLAMAS PGDGSRENGE HSPRSNVREQ  60
DRFLPVANIS RIMKKALPAN GKIAKDAKET TQECVSEFIS FITSEASEKC QREKRKTING  120
DDLLSAMATL GFEEYIEPLK LYLQKYREME GDSKLSTKVA DNAGKREATG LQVANQPGTS  180
TQVELKMPNH SSFAHGMTYM QSQFHGGDLS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-68NF-YB family protein