PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549055.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 519aa MW: 55218.8 Da PI: 6.0592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.7e-10	153	177	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ XP_028549055.1 153 GEKDCVHYMLTRTCKFGEACKFDHP 177 7889********************9 PP
2	zf-CCCH	39.7	7.9e-13	227	250	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+a+tGtCk+G++CkF+H++ XP_028549055.1 227 TVCSFYAKTGTCKFGANCKFHHPK 250 68********************96 PP
3	zf-CCCH	37.1	5.3e-12	306	330	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ XP_028549055.1 306 GESDCPFYLKTGSCKYGATCRYSHP 330 7889********************9 PP
4	zf-CCCH	41.6	2e-13	386	411	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G+rCkF+H+ XP_028549055.1 386 PGEAECDYYMRTGHCKFGERCKFHHP 411 5789*********************9 PP
5	zf-CCCH	41.9	1.7e-13	443	466	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_028549055.1 443 VACPFYMKTGTCKYGAACRFDHPP 466 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL 60 RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT 120 IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV 180 PEGGIPDWKE VPLISTTESF PERTGEPDCP SEAIPISSIL PERPSETVCS FYAKTGTCKF 240 GANCKFHHPK DIQIQSAGKY TGYVEKKEST ANNAAAATVD IKHTKAFVPF SPATLSNSKG 300 LPIRPGESDC PFYLKTGSCK YGATCRYSHP DRIFINPTQT ANLSNAFITP AIASLPIGVI 360 NPAASFVPSI DPRFAQLGVT VYPQKPGEAE CDYYMRTGHC KFGERCKFHH PLDRSASTVA 420 SAKPTQESVK LTLAGLPRRE GSVACPFYMK TGTCKYGAAC RFDHPPPGEA IAMAQLSHGI 480 AEADNSSSGD EVESDEEVES ANEVESGGEE EGDDTETSQ

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL  60
RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT  120
IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV  180
PEGGIPDWKE VPLISTTESF PERTGEPDCP SEAIPISSIL PERPSETVCS FYAKTGTCKF  240
GANCKFHHPK DIQIQSAGKY TGYVEKKEST ANNAAAATVD IKHTKAFVPF SPATLSNSKG  300
LPIRPGESDC PFYLKTGSCK YGATCRYSHP DRIFINPTQT ANLSNAFITP AIASLPIGVI  360
NPAASFVPSI DPRFAQLGVT VYPQKPGEAE CDYYMRTGHC KFGERCKFHH PLDRSASTVA  420
SAKPTQESVK LTLAGLPRRE GSVACPFYMK TGTCKYGAAC RFDHPPPGEA IAMAQLSHGI  480
AEADNSSSGD EVESDEEVES ANEVESGGEE EGDDTETSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-148	C3H family protein