PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549194.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 731aa MW: 82592.2 Da PI: 4.8701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00072	567	604	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+a K s + Le++v+++ Lq XP_028549194.1 567 RQLIQDRIRELRELIPNA-----SKCSIDALLEQTVKHMIFLQ 604 67799************9.....46666666666666665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MGSATALNQL LRNLCHRSMW KYAILWKFRD ENHMLLTCED SYAIDKKLDI AMEHAQYKEF 60 NSYHPFGSEA IGQNGNIPAC SILVAVFNMT RFSYLLGEGI VGKVASMERH QWICVGEMNS 120 ELLLEYPEEL GLQVTAGIKT ILLLPVLPLG LLQLGSVDKL SEDLTMVAQL KEFFCAYQNA 180 LDSNSTFDLR MGQIESYMAL NRPLLEKYST CLEINTNLTD LIQAQPFLAP DLATLCFDEV 240 ASVRLPHPMV QSYDPFTQVG FHQAHGLGID RLDEISGNAM YIELFQDHSE EQVILNTSTL 300 SGRTMESDRL PTHHEEVKTI PVIRQGLTLK SPTMFDAYMK VQQCDDFCDF DKVNLKFAHE 360 FDVVTNSTTE SRNLDFSVES GLHKVMGQNC LMGWNNSAWV EMLSIEGVGS ELITSFKAEV 420 PEIIVYSVEE PCVVDENRTE YLAQISMVEL ASVSDDKELD SCECCKSRCS SSGRCSESCL 480 TQCKTEDVSN SEDSGLVGHK MPSLIPDSEG TSYCTTCPER SSVHMALKNE DHENIVCGSW 540 RSCLDESHGS NRQVKNRDPH RPRPRDRQLI QDRIRELREL IPNASKCSID ALLEQTVKHM 600 IFLQSVPTHA DKLSQSTRSK VGEKDLNFHG TQVTENGASW ACKVGTTWKP FPLVVENLDQ 660 PDQMLVEMQC RNHGLFLDIA QAIKRLGLTI LRGILESRLE QLWAHFIIEI PKGFQRMDIV 720 WPLMQLLQLN F

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MGSATALNQL LRNLCHRSMW KYAILWKFRD ENHMLLTCED SYAIDKKLDI AMEHAQYKEF  60
NSYHPFGSEA IGQNGNIPAC SILVAVFNMT RFSYLLGEGI VGKVASMERH QWICVGEMNS  120
ELLLEYPEEL GLQVTAGIKT ILLLPVLPLG LLQLGSVDKL SEDLTMVAQL KEFFCAYQNA  180
LDSNSTFDLR MGQIESYMAL NRPLLEKYST CLEINTNLTD LIQAQPFLAP DLATLCFDEV  240
ASVRLPHPMV QSYDPFTQVG FHQAHGLGID RLDEISGNAM YIELFQDHSE EQVILNTSTL  300
SGRTMESDRL PTHHEEVKTI PVIRQGLTLK SPTMFDAYMK VQQCDDFCDF DKVNLKFAHE  360
FDVVTNSTTE SRNLDFSVES GLHKVMGQNC LMGWNNSAWV EMLSIEGVGS ELITSFKAEV  420
PEIIVYSVEE PCVVDENRTE YLAQISMVEL ASVSDDKELD SCECCKSRCS SSGRCSESCL  480
TQCKTEDVSN SEDSGLVGHK MPSLIPDSEG TSYCTTCPER SSVHMALKNE DHENIVCGSW  540
RSCLDESHGS NRQVKNRDPH RPRPRDRQLI QDRIRELREL IPNASKCSID ALLEQTVKHM  600
IFLQSVPTHA DKLSQSTRSK VGEKDLNFHG TQVTENGASW ACKVGTTWKP FPLVVENLDQ  660
PDQMLVEMQC RNHGLFLDIA QAIKRLGLTI LRGILESRLE QLWAHFIIEI PKGFQRMDIV  720
WPLMQLLQLN F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	9e-40	bHLH family protein