PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549364.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 231aa    MW: 25590.2 Da    PI: 10.7471
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.14.4e-3188145158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rakle ++k +++ rkpylheSRh hA++R+Rg+gGrF
  XP_028549364.1  88 EEPIYVNAKQYKAILRRRQHRAKLEFHNKSSKNPRKPYLHESRHLHAMKRARGTGGRF 145
                     69*******************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MIRQMKKVMN ACMRSLSRVI QNRFYQQGAH NSSMHHKNLI QAYLPYAYSD AHYAGVMAAY  60
GSHAAIHPQM MGLSPCSRVA LPHQPAGEEP IYVNAKQYKA ILRRRQHRAK LEFHNKSSKN  120
PRKPYLHESR HLHAMKRARG TGGRFLNTKK IQDASGLHDF AGSEPPQPGR TVGLHNGAAI  180
SSATPTCSEI TSVSNDGGQV VKLHSQAHLG FTYGCDGLFN NGTKLRVPVA R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-36NF-YA family protein