PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549365.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 230aa    MW: 25462.1 Da    PI: 10.7471
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.24.4e-3187144158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rakle ++k +++ rkpylheSRh hA++R+Rg+gGrF
  XP_028549365.1  87 EEPIYVNAKQYKAILRRRQHRAKLEFHNKSSKNPRKPYLHESRHLHAMKRARGTGGRF 144
                     69*******************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MIRQMKKVMN ACMRSLSRVI QNRFYQQGAH NSSMHHKNLI AYLPYAYSDA HYAGVMAAYG  60
SHAAIHPQMM GLSPCSRVAL PHQPAGEEPI YVNAKQYKAI LRRRQHRAKL EFHNKSSKNP  120
RKPYLHESRH LHAMKRARGT GGRFLNTKKI QDASGLHDFA GSEPPQPGRT VGLHNGAAIS  180
SATPTCSEIT SVSNDGGQVV KLHSQAHLGF TYGCDGLFNN GTKLRVPVAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.13e-36NF-YA family protein