PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549413.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 189aa    MW: 21319.5 Da    PI: 8.1951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.74.2e-43121111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyf  e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear++dP+yG+vg i+ lq+q+++l++el+
  XP_028549413.1  12 PCAACKFLRRKCMPGCIFAPYFSPEEPQKFINVHKVFGASNVTKLLNELLPSQREDAVNSLAYEAEARIKDPIYGCVGAISVLQRQVQRLQKELD 106
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028549413.1 107 ATRAE 111
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MASSSTTIFG SPCAACKFLR RKCMPGCIFA PYFSPEEPQK FINVHKVFGA SNVTKLLNEL  60
LPSQREDAVN SLAYEAEARI KDPIYGCVGA ISVLQRQVQR LQKELDATRA ELLRYAYVEH  120
RSANISTISS RLHYPYDLPS PTHGLLPSFT NYYLPRSWNA STSNSSTDIA FTMDMMPMFL  180
AELLYIQIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-69LBD family protein