PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549432.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 322aa    MW: 35323 Da    PI: 7.56
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492132511154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +R +++ +++  L++l+ +      +K + a++L +A  YIk L
  XP_028549432.1 213 KRSQKLGDKITALQQLVSPF-----GKADTASVLHEAAVYIKAL 251
                     6889999**********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MLRFFESEVD SWWSMAATPP PQPCHYVELP VDPRLQVRVD HYSESGTAPP MNIAPAACRL  60
VPSALTTADL VKGRWSPATV VSNGSSLSSP NSSSSVDSMN SYGGCGIISW QSSNAFSIES  120
AIDPYIAPFK VDRSSSIAMD SGRRNQHEVV VDLRQHRRKL DENKNIEAVI RDSKRQKTGV  180
QEGNLHCFTS FESTSSSPSM MMTAEQNLKA PLKRSQKLGD KITALQQLVS PFGKADTASV  240
LHEAAVYIKA LHEQVKLLSK PYVESISATE GIQEMKNGAD NCHYRSSSLR REGLCMVPIS  300
PSVINLANQE LLDSHMTASL LR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-22bHLH family protein