PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549584.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1015aa MW: 114131 Da PI: 6.2822

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169.7	4.6e-53	15	129	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwlkn+e++ iL+n+e+ +++e++++p+sgsl+L+nr+++++frkDG+ w+kkkdg++v E+he+LKvg+v++l+cyYah+e+n+ fqrr XP_028549584.1 15 DaQNRWLKNSEVLFILQNHENLPIEQETPDKPTSGSLFLFNRRVLKFFRKDGHMWRKKKDGRAVGEAHERLKVGNVDALNCYYAHGEKNRYFQRR 109 3489***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L++++++ivlvhy+ev XP_028549584.1 110 IYWMLDHAYDHIVLVHYREV 129 ****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MQSGLSFHFG KLRQDAQNRW LKNSEVLFIL QNHENLPIEQ ETPDKPTSGS LFLFNRRVLK 60 FFRKDGHMWR KKKDGRAVGE AHERLKVGNV DALNCYYAHG EKNRYFQRRI YWMLDHAYDH 120 IVLVHYREVS EGRFLPPIDS QQTQEPLSSR NGNSSANNIQ FRRVPSATSE VYDSCETSCS 180 PISGEANSQH VGKDVDTNRS NMFNTSANSD PLSQQEINLA LRDLEEQLSL DKYDDNVPVD 240 ILPVHTDEHK NLEDLALMDS KTWNSFQKLQ ENLTPMKEYT GCDQGVNGQL KSHDRKISPS 300 WNDMLERTEL DAHGRAFNAM ALANGSKPST INAAGAYHHG IENEFKHGSQ FSSENIFDAQ 360 LEQISWQHPG RAGNYAGRIA DGSDINRLLF LGLGSLGSPD SVVDLAAGEL YNAPGTTGDG 420 RNSNEVSVQK ENGIDYMEEP CLTVPHKLLF RIREISPEWS FSFERTKVII TGDFLCNPSS 480 RSWAVMFGEV QVPAEIIQEG VLRCQAPEHS SGKVALCITS GNKESCSEVR EFEFHSKSVT 540 SSLETSHLVN ATINSEELSL LVEFINVLLC RSDELSVSKG AEPKETECRR KLKAAEDQWF 600 QSHELQTEIL PGAIDGILQE LIKDKFQQWL SSKTNAKEDG SCLLSNTEQH IIHMISGLGY 660 EWALKPILDA GVGINFRDAN GRTALHWAAR FGREKMAAAL LATGAFAGAV TDPTPQDPVG 720 KTAGAIAAAS GHNGLAGYLS EAYLTDYLYS IKGLTVVEDE KIVESISERS ASVQVGETED 780 ALSLKDSLAA VRNAAQAAAR IQAAFRAHSF KKRQEKEAMN RDEYGMTSEE MHCLASSIKI 840 QKTLNSYPDQ KLDKAALSIQ TKYRGWKGRK AFLSFRQRVV KIQAHVRGHQ ARMKYKELLS 900 AVSVLEKLIL RWRRRGVGLR GFLLKSDIAD EGEEEDIIKV FRKQKVDAAL EQALSRVLSM 960 VESPRSRQQY RRMLECYCQV KAEQQSAEEA IPRLRDYFEL VEDDEFLHWL QEDQL

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MQSGLSFHFG KLRQDAQNRW LKNSEVLFIL QNHENLPIEQ ETPDKPTSGS LFLFNRRVLK  60
FFRKDGHMWR KKKDGRAVGE AHERLKVGNV DALNCYYAHG EKNRYFQRRI YWMLDHAYDH  120
IVLVHYREVS EGRFLPPIDS QQTQEPLSSR NGNSSANNIQ FRRVPSATSE VYDSCETSCS  180
PISGEANSQH VGKDVDTNRS NMFNTSANSD PLSQQEINLA LRDLEEQLSL DKYDDNVPVD  240
ILPVHTDEHK NLEDLALMDS KTWNSFQKLQ ENLTPMKEYT GCDQGVNGQL KSHDRKISPS  300
WNDMLERTEL DAHGRAFNAM ALANGSKPST INAAGAYHHG IENEFKHGSQ FSSENIFDAQ  360
LEQISWQHPG RAGNYAGRIA DGSDINRLLF LGLGSLGSPD SVVDLAAGEL YNAPGTTGDG  420
RNSNEVSVQK ENGIDYMEEP CLTVPHKLLF RIREISPEWS FSFERTKVII TGDFLCNPSS  480
RSWAVMFGEV QVPAEIIQEG VLRCQAPEHS SGKVALCITS GNKESCSEVR EFEFHSKSVT  540
SSLETSHLVN ATINSEELSL LVEFINVLLC RSDELSVSKG AEPKETECRR KLKAAEDQWF  600
QSHELQTEIL PGAIDGILQE LIKDKFQQWL SSKTNAKEDG SCLLSNTEQH IIHMISGLGY  660
EWALKPILDA GVGINFRDAN GRTALHWAAR FGREKMAAAL LATGAFAGAV TDPTPQDPVG  720
KTAGAIAAAS GHNGLAGYLS EAYLTDYLYS IKGLTVVEDE KIVESISERS ASVQVGETED  780
ALSLKDSLAA VRNAAQAAAR IQAAFRAHSF KKRQEKEAMN RDEYGMTSEE MHCLASSIKI  840
QKTLNSYPDQ KLDKAALSIQ TKYRGWKGRK AFLSFRQRVV KIQAHVRGHQ ARMKYKELLS  900
AVSVLEKLIL RWRRRGVGLR GFLLKSDIAD EGEEEDIIKV FRKQKVDAAL EQALSRVLSM  960
VESPRSRQQY RRMLECYCQV KAEQQSAEEA IPRLRDYFEL VEDDEFLHWL QEDQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-134	CAMTA family protein