PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549639.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 494aa MW: 55070.6 Da PI: 7.0941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	311	356	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_028549639.1 311 HNLSERRRRDKINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 356 9**********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MNDCVPDWKM EDDSRPFYGL PVTNEKKCMG YSCRPENELT ELLRRNRHGV LHGQTNHKAL 60 PAIFESKQTQ KPESLLKCGD SVVNSSNFID EEEATSWFQY SLDNSMDKEL SEFFYGMPTA 120 EIISTDKAMK EDSNVCTKKS CFHPHDNVML SPKSSLGDSA TVVKFSNHRK PRKADLVSEN 180 RKFCEEASSS EAVVGMADSS SLRKILSSVC GSNQAQNEAE VTHALSSVKG AKDSLSRSTL 240 DHLEANTYEP AITSSSGGSR RSSTKHGLKR KGRNAEESEG QSEEAEYESA EANKAAQRPA 300 SGRRSRSAEI HNLSERRRRD KINEKMRALQ ELIPHCNKSD KASMLDEAIE YLKSLQLQLQ 360 IMWMGNGVAP MLFPSIQQYV SCMGNAMNHH SMTSIPNPVQ PPKVSSDIQS TTLGTSISNQ 420 PHVCPPQGPN SINFATQMHN FHIPEQYSSY FGFPQMQMPP QVMNICTYGP QTMQQNQMVA 480 AVDKQQHTNN KSSI

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MNDCVPDWKM EDDSRPFYGL PVTNEKKCMG YSCRPENELT ELLRRNRHGV LHGQTNHKAL  60
PAIFESKQTQ KPESLLKCGD SVVNSSNFID EEEATSWFQY SLDNSMDKEL SEFFYGMPTA  120
EIISTDKAMK EDSNVCTKKS CFHPHDNVML SPKSSLGDSA TVVKFSNHRK PRKADLVSEN  180
RKFCEEASSS EAVVGMADSS SLRKILSSVC GSNQAQNEAE VTHALSSVKG AKDSLSRSTL  240
DHLEANTYEP AITSSSGGSR RSSTKHGLKR KGRNAEESEG QSEEAEYESA EANKAAQRPA  300
SGRRSRSAEI HNLSERRRRD KINEKMRALQ ELIPHCNKSD KASMLDEAIE YLKSLQLQLQ  360
IMWMGNGVAP MLFPSIQQYV SCMGNAMNHH SMTSIPNPVQ PPKVSSDIQS TTLGTSISNQ  420
PHVCPPQGPN SINFATQMHN FHIPEQYSSY FGFPQMQMPP QVMNICTYGP QTMQQNQMVA  480
AVDKQQHTNN KSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	320	ERRRRD
2	316	321	RRRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	1e-41	bHLH family protein