PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549692.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 369aa MW: 40638.2 Da PI: 8.6074

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.6	9e-38	42	171	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a pai el+++ ss +++ ++ s+++++ss+ + +++ + XP_028549692.1 42 SGGKDRHSKVFTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAIEWLIKAASPAISELPSLVSSFPEF---ADISKMNAESSKMNTEAEPGC 133 689***********************************************************4444423...344444444455577778889 PP TCP 97 skksqksaasalnlak.esrakarararertrekmrik 133 s+ s++s+ s+l+l++ e r kar+rar r ++++ k XP_028549692.1 134 SSTSETSKGSVLSLSRsEIRIKARERARLRAAKDQEEK 171 999*********999*******9988887766 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEVKQQASKR SRFSNCNKDN ELPRTMTLSQ SSSRIFRVSR ASGGKDRHSK VFTSKGLRDR 60 RVRLSVSTAI QFYDLQDRLG VDQPSKAIEW LIKAASPAIS ELPSLVSSFP EFADISKMNA 120 ESSKMNTEAE PGCSSTSETS KGSVLSLSRS EIRIKARERA RLRAAKDQEE KREDAGDHLD 180 TTEQHPQDMN QSSFTELLSA GSASETAQIQ EILRPSTVTA DYFGQAGFFA RTQHVPPTFC 240 STKSQNFGIS SSVGMMPYNI AAATGDNPEM QQFSFINDHT DYNVNFSIAP GLTGFYRGTL 300 QSNPSAHSPF SPASIDVQNL PFILGAAATS TEANFHSIFD SRLQLSREPT TPFCLDGYRP 360 SDLKGKRKS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEVKQQASKR SRFSNCNKDN ELPRTMTLSQ SSSRIFRVSR ASGGKDRHSK VFTSKGLRDR  60
RVRLSVSTAI QFYDLQDRLG VDQPSKAIEW LIKAASPAIS ELPSLVSSFP EFADISKMNA  120
ESSKMNTEAE PGCSSTSETS KGSVLSLSRS EIRIKARERA RLRAAKDQEE KREDAGDHLD  180
TTEQHPQDMN QSSFTELLSA GSASETAQIQ EILRPSTVTA DYFGQAGFFA RTQHVPPTFC  240
STKSQNFGIS SSVGMMPYNI AAATGDNPEM QQFSFINDHT DYNVNFSIAP GLTGFYRGTL  300
QSNPSAHSPF SPASIDVQNL PFILGAAATS TEANFHSIFD SRLQLSREPT TPFCLDGYRP  360
SDLKGKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	2e-46	TCP family protein