PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549713.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 251aa    MW: 28717.3 Da    PI: 6.2491
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-152166148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++   E+e+++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_028549713.1 21 RGNFNSHEEEIIIQLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 66
                     899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MRCSKSCRLR WTNYLRPGIK RGNFNSHEEE IIIQLQALLG NRWAAIASYL PQRTDNDIKN  60
YWNTHLKKKI KTFQAARSNY ITSSDSAGST IQERVHGGYP IEEIRNSGTS NSHILAHNSS  120
TYASSAENIS RLLEGWMRSS PSQTLSDEKL QHQMINNYDS FIMNQLNFNV EINSQLLLED  180
SVNGVDKTAL DSVFEEKKQF KMVASDLNKL ESQSQQPPMF MLEKWLLEEN TGLMDAFLEL  240
SSADCCSELM F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-60MYB family protein