PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549740.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 802aa MW: 91958.2 Da PI: 8.3836

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.4e-26	11	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA e+GFs+r+s+ + ++ ge+++rtf+Cs+eg r ++++k e+ +++r etr++C+aklk++++ +gk++v ++ eHnHela XP_028549740.1 11 DFYNRYAFEMGFSIRRSSRHLLRKGGEVKDRTFCCSREGIRGKDRRK-ETVQTPRYETRCNCNAKLKISLR-NGKYYVFQFIPEHNHELA 98 6****************************************9999.99999**************.**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence
MEFETEQEAY DFYNRYAFEM GFSIRRSSRH LLRKGGEVKD RTFCCSREGI RGKDRRKETV 60 QTPRYETRCN CNAKLKISLR NGKYYVFQFI PEHNHELASR TQVHRLRSHR HIIPAQPVTT 120 LGISPKPTFD LMSAEVDGHE NLGFILNFGN DLQAEQPLTV KLGDSGGVLE YLEKMQREDP 180 KFFYSVQLDK LHTATNIFWA DSRMIADYKN FGDVVCIDTT YKRFNVDNRL FGLLVGVNNH 240 KQLIVFGSFL LDDETSESFK WMFSTFLKAM LGNKPKTVLT DDNIAMAKAI KMCMPEANHR 300 ICVWQIGQNI CQQLSVVVRD YKNFCIDFSS CLYDHDEEAA FIDSWNAMLV KYKLVGNACL 360 DRLFEKKEQW ALVYDRKVFY AGIYNAQRND NISKELKNFL NAENDILLLF KHLQRLVEGR 420 RYEEIKADIA ASHSMPKLKF DLGILKHAAR TYTPAIFKMF QDELLQTWNC DMHFFGETGS 480 ISTYKLKTNG EIQEHTVMFD SSKVSVECSC KNFEFIGILC THALKVLDFK NIRTIPVCYL 540 LKRWMKDAKM VGVVGSCTPC LDPKIELRRR YKELCRLFVQ VAAKAAETEE TYAIAAGQIN 600 KLLQEVEKRL RKRYKPDPEG EHTELNALEV ELGQTMEGDV SSREQMQTQK LKGMKLTANK 660 KKKKIRPQQI SVGTAEQNLS AIHLNNDVYN PTSDPVQRNA SSSMGREAPQ DNFARQHPVT 720 ANANLWLDLS QPPTVGAHTS LIADSFQLQA VQASSFSPGL YQIHNPATTI PINQQGHLNM 780 LQQFEPQLHS LSRQLFSGSA EG

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence

MEFETEQEAY DFYNRYAFEM GFSIRRSSRH LLRKGGEVKD RTFCCSREGI RGKDRRKETV  60
QTPRYETRCN CNAKLKISLR NGKYYVFQFI PEHNHELASR TQVHRLRSHR HIIPAQPVTT  120
LGISPKPTFD LMSAEVDGHE NLGFILNFGN DLQAEQPLTV KLGDSGGVLE YLEKMQREDP  180
KFFYSVQLDK LHTATNIFWA DSRMIADYKN FGDVVCIDTT YKRFNVDNRL FGLLVGVNNH  240
KQLIVFGSFL LDDETSESFK WMFSTFLKAM LGNKPKTVLT DDNIAMAKAI KMCMPEANHR  300
ICVWQIGQNI CQQLSVVVRD YKNFCIDFSS CLYDHDEEAA FIDSWNAMLV KYKLVGNACL  360
DRLFEKKEQW ALVYDRKVFY AGIYNAQRND NISKELKNFL NAENDILLLF KHLQRLVEGR  420
RYEEIKADIA ASHSMPKLKF DLGILKHAAR TYTPAIFKMF QDELLQTWNC DMHFFGETGS  480
ISTYKLKTNG EIQEHTVMFD SSKVSVECSC KNFEFIGILC THALKVLDFK NIRTIPVCYL  540
LKRWMKDAKM VGVVGSCTPC LDPKIELRRR YKELCRLFVQ VAAKAAETEE TYAIAAGQIN  600
KLLQEVEKRL RKRYKPDPEG EHTELNALEV ELGQTMEGDV SSREQMQTQK LKGMKLTANK  660
KKKKIRPQQI SVGTAEQNLS AIHLNNDVYN PTSDPVQRNA SSSMGREAPQ DNFARQHPVT  720
ANANLWLDLS QPPTVGAHTS LIADSFQLQA VQASSFSPGL YQIHNPATTI PINQQGHLNM  780
LQQFEPQLHS LSRQLFSGSA EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein