PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549779.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 326aa    MW: 38402.1 Da    PI: 10.2303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-2127116199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f kv+     +++g + +pk+f+e+++g+   skt+ le ++g+ W+++l  +k sg++v+ +GWkeFv+++g+keg+ +vF+ +g+s+f   v+
  XP_028549779.1  27 FMKVM--LKDFSQG-MAIPKHFVENFKGE--LSKTINLEVSKGKLWQFNL--QKISGSFVIIDGWKEFVDDHGIKEGEYLVFTCSGNSSF--QVQ 112
                     56666..6677777.********988877..999****************..*******************************9999999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  XP_028549779.1 113 IFDN 116
                     9986 PP
2B345.61.3e-14225319398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                       +++  v+ +  + +p  f+++h + k  + ++tl + +g++W+v ++y   s   + ++ Wk Fv++n Lk+gD +vF+l+  + +++ + v+
  XP_028549779.1 225 RLMKHTAVNVLFFMAIPAVFFTKHFSHK--PEKITLHNHQGKKWDVICSYHCFSW-GFKRQTWKTFVRENYLKVGDACVFELKaFTrKNAAMSVR 316
                     556666677778899*********7664..447***************7744443.345679*******************88644477777777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_028549779.1 317 IVR 319
                     776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MEESCWFCKK WEQHYYWDHL KLTNHRFMKV MLKDFSQGMA IPKHFVENFK GELSKTINLE  60
VSKGKLWQFN LQKISGSFVI IDGWKEFVDD HGIKEGEYLV FTCSGNSSFQ VQIFDNGACL  120
EMLLTYQLKM LKLWPRKDAK NKTKIATLLI LLKISIQLAS QRQSRLQVTN YLQLERSVRL  180
KFSVMKPLNP TEKVVMETLE AKKLKSKKRS IDFDAIKPES PYFIRLMKHT AVNVLFFMAI  240
PAVFFTKHFS HKPEKITLHN HQGKKWDVIC SYHCFSWGFK RQTWKTFVRE NYLKVGDACV  300
FELKAFTRKN AAMSVRIVRA TDEDLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-22B3 family protein