PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549800.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 134aa MW: 15450.7 Da PI: 10.8512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed+ll ++ +G g W+t++ + g++R++k+c++rw++yl XP_028549800.1 14 KGAWTTVEDKLLTAFINIHGEGKWTTVPYKAGLKRSGKSCRLRWLNYL 61 79*********************************************7 PP
2	Myb_DNA-binding	55.8	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE +l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_028549800.1 67 RGNFSEEENDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 89******************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence
MGRNSCSFKE GLNKGAWTTV EDKLLTAFIN IHGEGKWTTV PYKAGLKRSG KSCRLRWLNY 60 LRPNVKRGNF SEEENDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLATIFFNKQ 120 EGYPKHAISR RVNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-56	MYB family protein