PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549883.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 446aa MW: 49691.4 Da PI: 8.1932

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	17	39	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+Fs+ L H+r+H XP_028549883.1 17 YHCRFCGKRFSNGRALGGHMRVH 39 89*******************99 PP
2	zf-C2H2	12.2	0.00057	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F+++ L H +H XP_028549883.1 197 FECKTCQKVFTSHQALGGHRASH 219 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MTIFKKEKLV EKEEEKYHCR FCGKRFSNGR ALGGHMRVHG MFNKPILHPN KSPSTTGVEG 60 DSSDSNCLPT SHICQNCRKE FCSLKSLSKH CCRGLVGVGR DDGENDNSND LFSPSLSQSK 120 IPTQPLVLTE EERVANCLVM LSTACANPVF RNTDEAECST SKRRDVDYVF LLPSLPQPEG 180 PKPHISTQTP QNAHKLFECK TCQKVFTSHQ ALGGHRASHK EVEDCFATRV EIRSPKRMKF 240 TAIEDESNNK NHQNNRAISS SENMTLPIVP FVGTSSQLPL PKKKPKVHEC STCKRQFPSG 300 QALGGHMRCH WRASTSRGAT VDPLSVVATK LQAGNSSSRL NDIQPHKLRT ISLISTPDLN 360 IPSPIHDFPE VTLCLGVPIT TMYVQPGREN VNENMLNVNI EEVESREVRL NDLSDLLDIN 420 ERKVGSTWLQ IGLESISKQE TRADQP

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MTIFKKEKLV EKEEEKYHCR FCGKRFSNGR ALGGHMRVHG MFNKPILHPN KSPSTTGVEG  60
DSSDSNCLPT SHICQNCRKE FCSLKSLSKH CCRGLVGVGR DDGENDNSND LFSPSLSQSK  120
IPTQPLVLTE EERVANCLVM LSTACANPVF RNTDEAECST SKRRDVDYVF LLPSLPQPEG  180
PKPHISTQTP QNAHKLFECK TCQKVFTSHQ ALGGHRASHK EVEDCFATRV EIRSPKRMKF  240
TAIEDESNNK NHQNNRAISS SENMTLPIVP FVGTSSQLPL PKKKPKVHEC STCKRQFPSG  300
QALGGHMRCH WRASTSRGAT VDPLSVVATK LQAGNSSSRL NDIQPHKLRT ISLISTPDLN  360
IPSPIHDFPE VTLCLGVPIT TMYVQPGREN VNENMLNVNI EEVESREVRL NDLSDLLDIN  420
ERKVGSTWLQ IGLESISKQE TRADQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-20	C2H2 family protein