PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549917.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 719aa    MW: 81337.6 Da    PI: 7.017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0682103526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+f++  G Ck+G+ C+  H 
  XP_028549917.1  82 ECKFYLLPGGCKFGNDCRSLHH 103
                     7*****************9996 PP
2zf-CCCH28.32.9e-09117140326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+f++rtG Ck+ + C+F+H+
  XP_028549917.1 117 EKECPFYMRTGGCKFASHCRFHHP 140
                     689********************9 PP
3zf-CCCH27.94.1e-09238264127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG+Ck+ + C+++H++
  XP_028549917.1 238 PGEPECQYFMKTGYCKFKSACRYHHPK 264
                     5799*********************96 PP
4zf-CCCH27.17.4e-09371396227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + ++C++f++tG+Ck+ ++C+++H++
  XP_028549917.1 371 GKPECQYFMKTGYCKFKATCRYHHPK 396
                     789*********************96 PP
5zf-CCCH25.91.7e-08512537227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + ++C+ff++tG+Ck+ + C+++H++
  XP_028549917.1 512 GKPECQFFMKTGQCKFKSACRYHHPK 537
                     789*********************96 PP
6zf-CCCH24.93.6e-08655679327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Cr+f++tG+Ck  + C+++H++
  XP_028549917.1 655 EPECRYFMKTGHCKLKSACRYHHPK 679
                     799********************96 PP
7zf-CCCH22.12.6e-07692715226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     + ++C ++ r G+Ck+G+ C+++H 
  XP_028549917.1 692 DKPICTYYGR-GICKFGSACRYSHH 715
                     6799******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    
MPMTTSTGTM EDKEFTKVEQ DNKMGLAGDH REITAVEKDT RIRSDETGSD TFVMDRKFNH  60
PLREGARGPE NITSSENVGQ IECKFYLLPG GCKFGNDCRS LHHVRLNFLG LPIRLGEKEC  120
PFYMRTGGCK FASHCRFHHP DPTAVIGDSF QDLKNGVPSQ HHVLAEQLCE TPMPSENPSN  180
EQTDFLGPFT PNRGFQENVH RKGNQTTTSP LHSREMNIND QRQILANRDT AEEYPQRPGE  240
PECQYFMKTG YCKFKSACRY HHPKSNVSFL GLPQRSSSQQ LRETPLPSEN TSKEQTAFLG  300
PSSSYVPDLF TPSHGLKTNA QWNGSQSVTN LLHPSEIKIV DQQQEFVKRD PAYEFSGGEP  360
QQYDAYPQRP GKPECQYFMK TGYCKFKATC RYHHPKSNLS FLGLPLRPAS NDCKQDGPVE  420
QICEVPLSSE DASNDQRAFL CPSSSDVQSL FTPIQGIQPN VQWNVDQAVT SLLYPQETKI  480
INHQQELASK DAAYEFSGGE PQQHDEYPQR PGKPECQFFM KTGQCKFKSA CRYHHPKSNL  540
SFPSLPLRSA SNNYEQNGSS EQLSEIPLSS ENALNDQRTV LSPSSSNVQG LFTPEQGLWT  600
TQQWNGDQMA TNPLHPPEIK KNEEKHELAN TDTAYDLNGG VKSQQLDEYP QRPNEPECRY  660
FMKTGHCKLK SACRYHHPKS NRSLLTPPLK PDKPICTYYG RGICKFGSAC RYSHHMEHT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-37C3H family protein